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Understand how autoimmune diseases intersect with endometriosis, including shared mechanisms, overlapping symptoms, and risks. Get guidance on implications for diagnosis, treatment options, and coordinating care with your healthcare team.

Overview

Autoimmune diseases occur more often in people with endometriosis than in the general population, even though endometriosis itself isn’t classified as primarily autoimmune. Immune dysregulation—changes in macrophages, T and B cells, cytokines, and autoantibodies—may help explain higher rates of thyroiditis, celiac disease, rheumatoid arthritis, psoriasis, lupus, and Sjögren’s syndrome. Because fatigue, joint aches, rashes, and bowel changes can mimic an endometriosis flare, separating overlapping symptoms from a true comorbidity is essential for timely care.


Guidance centers on when to consider targeted testing, red flags that warrant referral, and how to coordinate care with rheumatology, endocrinology, and gastroenterology. Discover how immunosuppressants and biologics interact with hormonal options for endometriosis, ways to protect bone and gut health, and implications for conception and pregnancy. For digestive autoimmune conditions and the microbiome, see IBS / IBD and Gut Health; for pain control and hormone choices, see Medical Management; for family‑building, see Fertility & Reproductive Health and Pregnancy.

Common Questions

  • Can endometriosis cause arthritis-like joint pain?

    Yes, endometriosis can be associated with arthritis-like joint pain in some people. Whole-body inflammation may show up as aching or stiffness, but the association does not prove causation, and persistent joint pain deserves evaluation for other conditions.

  • Is MCAS connected to endometriosis?

    Yes, there appears to be an evolving connection, but endometriosis does not equal MCAS. Mast cells are often increased and more activated around endometriosis lesions, and in people with MCAS-like symptoms, mast-cell activity may amplify pelvic pain.

  • Is endometriosis linked to hypermobility (EDS/hEDS)?

    Yes, endometriosis and hypermobility syndromes like hEDS/EDS appear to overlap, but research is still evolving and neither is proven to cause the other. Patients with hypermobility often have more complex pelvic pain, sometimes with heightened nerve sensitivity.

  • Do autoimmune medications help endometriosis symptoms?

    Autoimmune medications can sometimes indirectly reduce fatigue or generalized pain by calming systemic inflammation from an autoimmune condition. They do not remove endometriosis lesions and typically don’t address endometriosis-specific symptoms.

Reach Out

Have a question?

Lotus Endometriosis Institute provides California-based surgical evaluation and advanced excision care for patients with suspected endometriosis, adenomyosis, complex pelvic pain, and related conditions.


Many patients contact us from outside California to learn whether traveling for in-person evaluation and possible surgery may be appropriate.

Call Us

(424) 255-1340

(805) 920-0909

Fax: (805) 935-4338

Santa Monica, CA

2121 Santa Monica Blvd, Santa Monica, CA 90404

Operating Hours

8am - 5pm
Monday - Friday

Arroyo Grande, CA

154 Traffic Way, Arroyo Grande, CA 93420