Skip to main content
Lotus Endometriosis Institute solid color logo
A beautiful landscape of lotus flowers

Endometriosis and Autoimmune Disease: Understanding the Link

How immune dysregulation connects endometriosis with autoimmune diseases—what the science shows, comorbid risks, and implications for diagnosis and care.

By Dr Steven Vasilev
Point-of-view vector scene of a woman in a clinic as a clinician points to a Venn-style display linking immune cells with endometriosis, suggesting autoimmune comorbidity.

Unraveling the Connection Between Endometriosis and Autoimmune Diseases


Endometriosis causes pain, multiple bowel symptoms, and infertility, among many other debilitating symptoms, and affects about 10% of women, mostly in the reproductive age range. Developing research has indicated a link between endometriosis and various autoimmune conditions.


Understanding Endometriosis


Endometriosis is a chronic gynecological disorder characterized by the presence of endometrial-like tissue growing outside the uterus. The cells resemble those lining the inner part of the uterus but differ markedly in multiple ways at the molecular level. The more we learn, the less certain the origins appear to be. They are likely partly genetic and partly influenced by multiple environmental factors acting on the body and genes.


The Immune System’s Role


Research suggests that abnormalities in the immune system may play a key role in the development of endometriosis. These abnormalities could prevent the immune system from effectively clearing ectopic endometrial cells, regardless of how they arrive there, allowing them to implant and grow outside the uterus. This hypothesis suggests that endometriosis might be, at least in part, an immunity-associated disorder.


Endometriosis is often accompanied by a chronic inflammatory response, triggered by the presence of ectopic endometrial-like cells. This inflammation, coupled with the immune system’s inability to effectively remove ectopic cells, could partly explain the chronic pain often associated with the condition.


Is Endometriosis an Autoimmune Disease?


Autoimmune diseases occur when the immune system mistakenly attacks the body’s own cells, treating them as foreign invaders. The link between endometriosis and autoimmune diseases is still being explored, and multiple studies suggest that women with endometriosis may have a higher risk for certain autoimmune conditions. It is not clear whether endometriosis carries a risk of developing autoimmune diseases, whether the reverse is true, or whether they simply share common molecular mechanisms that could result in both occurring in any given individual. At this point, it is important to stress that an association does not mean cause.


This review aims to delve into the current state of research on whether endometriosis is an autoimmune disease, presenting key findings from population-based studies, discussing potential implications, and highlighting areas for future research.


Systemic Lupus Erythematosus (SLE) and Endometriosis


Systemic Lupus Erythematosus (SLE) is an autoimmune disease characterized by inflammation and damage to various tissues, including the skin, joints, kidneys, and heart. Some studies suggest a positive association between endometriosis and SLE. One study reported a seven-fold increase in the odds of having SLE among women with endometriosis, though it relied on self-reported diagnoses, which may introduce bias. A more recent cohort study found a more modest but still significant elevation in SLE risk among women with endometriosis.


Sjögren’s Syndrome (SS) and Endometriosis


Sjögren’s Syndrome (SS) is an autoimmune disorder marked by dry eyes and mouth, often accompanied by other systemic symptoms. A meta-analysis of three case-control studies found a 76% higher odds of SS in women with endometriosis. These studies had small sample sizes and wide confidence intervals, indicating a need for further research. Confidence intervals describe the range around a measurement that indicates how accurate the conclusion might be; the tighter the range among measurements, the better.


Rheumatoid Arthritis (RA) and Endometriosis


Rheumatoid Arthritis (RA) is a chronic inflammatory disorder affecting many joints, including those in the hands and feet. Some research suggests a link between endometriosis and an increased risk of developing RA. One meta-analysis found a 50% increased risk of RA among women with endometriosis, but the studies included had limitations such as small sample sizes and wide confidence intervals.


Struggling with Endometriosis Symptoms?

Our specialists are here to help you understand your condition and explore your treatment options.

Schedule Your Consult

Autoimmune Thyroid Disorders (ATD) and Endometriosis


Autoimmune thyroid disorders (ATDs), including Graves’ disease and Hashimoto’s thyroiditis, arise when the immune system attacks the thyroid gland, leading to either overactivity (hyperthyroidism) or underactivity (hypothyroidism). A meta-analysis of three case-control studies suggested a non-significant increase in the odds of ATD in women with endometriosis. The studies showed high heterogeneity and low-quality scores, underscoring the need for further research.


Coeliac Disease (CLD) and Endometriosis


Coeliac disease (CLD) is an autoimmune disorder in which ingestion of gluten leads to damage in the small intestine. A meta-analysis of two case-control studies found a four-fold increase in the odds of CLD among women with endometriosis. As with several other findings, small sample sizes and wide confidence intervals point to the need for additional investigation.


Multiple Sclerosis (MS) and Endometriosis


Multiple Sclerosis (MS) is a chronic disease that attacks the central nervous system. Current research on the association between MS and endometriosis is limited and inconclusive, with some studies suggesting a possible link and others finding no significant association.


Inflammatory Bowel Disease (IBD) and Endometriosis


Inflammatory bowel disease (IBD), including Crohn’s disease and ulcerative colitis, is characterized by chronic inflammation of the gastrointestinal tract. One study reported a 50% increase in the risk of IBD among women with endometriosis, although the sample size was small and the confidence interval was wide, indicating a need for further research.


The Bigger Picture


While the evidence for an association between endometriosis and certain autoimmune diseases is compelling, correlation or association does not imply causation. Further research is needed to determine whether endometriosis actually increases the risk of developing autoimmune diseases or vice versa, or whether the two share common risk factors or underlying mechanisms. The potential link highlights the importance of a comprehensive approach to women’s health. For women with endometriosis, awareness of a possible increased risk of autoimmune diseases can inform healthcare decisions and monitoring.


Study Findings at a Glance

Condition

Study Type

Reported Association

Key Limitations

SLE

Case-control

Seven-fold increase in odds among women with endometriosis

Self-reported diagnoses may introduce bias

SLE

Cohort

Modest but significant elevation in risk

General study limitations not fully detailed

Sjögren’s Syndrome

Meta-analysis of 3 case-control studies

76% higher odds in women with endometriosis

Small sample sizes; wide confidence intervals

Rheumatoid Arthritis

Meta-analysis

50% increased risk in women with endometriosis

Small samples; wide confidence intervals

Autoimmune Thyroid Disorders

Meta-analysis of 3 case-control studies

Non-significant increase in odds

High heterogeneity; low-quality scores

Coeliac Disease

Meta-analysis of 2 case-control studies

Four-fold increase in odds

Small sample sizes; wide confidence intervals

Multiple Sclerosis

Mixed/limited studies

Limited and inconclusive; mixed findings

Insufficient data; inconsistent results

Inflammatory Bowel Disease

Single study

50% increase in risk in women with endometriosis

Small sample size; wide confidence interval


The Path Ahead


The intersection of endometriosis and autoimmune diseases is a complex and evolving field of research. Better understanding the relationship between these conditions could improve diagnosis, treatment, and ultimately, the quality of life for patients with endometriosis. Continued exploration of this connection is providing new insights into the pathophysiology of endometriosis and autoimmune diseases, potentially leading to novel treatments and preventive strategies.

Quick Answers

How do I make the most of a short endometriosis appointment?

Go in with a one-page snapshot of your story so the limited time is spent on decision-making, not backtracking. The most helpful snapshot includes: your top 2–3 symptoms, the pattern (cyclical vs daily, triggers, where pain starts and spreads), what you’ve already tried and what happened, and what your symptoms keep you from doing (work, school, intimacy, exercise). If you have a history of “normal” scans, bring that too—because imaging can miss endometriosis, and the pattern of symptoms and prior response to treatment still matters.


Bring the right records if you have them—especially operative reports, pathology, and imaging reports (and ideally the actual images). Then decide your goal for the visit: diagnostic clarity, a plan to evaluate look-alike or coexisting conditions, or a clear surgical discussion (whether surgery is likely to help, anticipated scope, and what recovery may involve). If you want to make the appointment count even more, reach out to our team ahead of time so we can review what you’ve already done and tell you exactly what information would be most useful for a focused, productive conversation.

Read full answer

What questions should I ask an endometriosis specialist?

Come in focused on how your surgeon thinks and how your care will be mapped out. Helpful questions include: based on my symptoms and records, what diagnoses are you considering (endometriosis, adenomyosis, and common look‑alikes), and what makes you lean one way or another? Ask what additional records or imaging would meaningfully change the plan, and whether your imaging will be interpreted with endometriosis mapping in mind—not just a “normal/abnormal” read.


If surgery is on the table, ask for specifics about technique and scope: do you primarily perform excision (rather than superficial burning/ablation), and how do you confirm what was removed (photos, operative report detail, pathology)? Ask what areas you expect could be involved in your case (ovaries, bowel, bladder/ureters, diaphragm) and whether a multidisciplinary team is planned if those organs may be affected. It’s also reasonable to ask how they define surgical “success” for your goals—pain relief, bowel/bladder function, fertility—and how outcomes and recurrence/persistent symptoms are handled.


Finally, ask how the care process works from start to finish: what the pre‑op workup includes, what recovery typically looks like for the anticipated complexity, and how follow‑up is structured if symptoms don’t resolve fully. In our practice, we review records purposefully before meeting so the conversation is productive and realistic, and we’ll be direct about whether surgery seems likely to help or whether another path makes more sense. If you’d like, you can reach out to schedule a consultation and we’ll tell you exactly what to send first so we can make your visit worth your time.

Read full answer

Is MCAS connected to endometriosis?

Yes—there appears to be an evolving connection, but it’s not as simple as “endometriosis equals MCAS.” What current research supports most strongly is that mast cells (the immune cells involved in allergic-type reactions) are often increased and more activated in and around endometriosis lesions, where they tend to cluster near nerves and blood vessels. When mast cells release mediators like histamine and other inflammatory signals, they can irritate pain-sensing nerves, promote nerve growth, and help sustain inflammation—one plausible reason endometriosis pain can feel burning, stabbing, widespread, or unusually persistent.


MCAS, though, is a systemic syndrome—meaning it can cause multi-system flares (for example flushing/itching, GI upset, shortness of breath, dizziness or fast heart rate) and may be triggered by stress, hormones, foods, or environmental exposures. Some people with endometriosis also have MCAS-like symptoms, and in those cases mast-cell biology may be amplifying pelvic pain and lowering the threshold for flares across the body. If this overlap sounds familiar, our team can help you sort out what’s likely being driven by endometriosis lesions themselves (including whether excision surgery may be part of your plan) versus broader mast-cell–type sensitivity that may need coordinated perioperative and long-term management.

Read full answer

Can endometriosis and interstitial cystitis happen together?

Yes—endometriosis and interstitial cystitis/bladder pain syndrome (IC/BPS) can occur together, and that overlap is one reason bladder symptoms can be so frustrating and persistent. Endometriosis can cause urinary urgency, frequency, burning, or bladder-adjacent pelvic pressure, but those same symptoms can also come from IC/BPS. Having one diagnosis doesn’t “rule out” the other, and when both are present, treating only endometriosis may not fully relieve bladder-driven pain.


A key part is sorting out what’s actually driving your symptoms: bladder endometriosis (lesions involving the bladder wall) is different from IC/BPS, even though they can feel similar. Bladder endometriosis often has a cyclical pattern around periods (though not always), while IC/BPS is typically pain/pressure that feels related to bladder filling and may improve after urinating, with symptoms persisting over time despite negative urine cultures. Our team looks at the whole picture—gynecologic, urinary, pelvic floor, and nervous system pain pathways—so we can build a plan that matches your specific symptom pattern rather than forcing everything into a single label.


If you’re dealing with ongoing urinary urgency/frequency, burning, or bladder pain—especially if prior endometriosis treatments haven’t helped as expected—reach out to schedule a consultation. We can help you determine whether this looks more like urinary tract endometriosis, IC/BPS, or a combination, and what next-step evaluation and treatment options make the most sense for you.

Read full answer

Is endometriosis linked to hypermobility (EDS/hEDS)?

Yes—there does appear to be meaningful overlap between endometriosis and joint hypermobility syndromes like hEDS/EDS, but the research is still evolving and it’s not accurate to say one definitively “causes” the other. What we see clinically is that patients with hypermobility often have more complex pelvic pain presentations, sometimes with heightened nerve sensitivity, pelvic floor muscle overactivity, and multi-system symptoms that can make endometriosis harder to recognize and harder to calm down.


One reason this overlap is getting attention is the way connective tissue differences and immune inflammation can intersect with pain processing. Hypermobility is also frequently discussed alongside related patterns like dysautonomia/POTS and mast-cell–type inflammation, which may help explain flares that seem disproportionate, widespread, or triggered by stress, hormones, foods, or environmental exposures.


If you’re hypermobile (or suspect you are) and also dealing with symptoms that fit endometriosis, we take that “whole picture” seriously. Our team can help you sort out what’s coming from endometriosis versus overlapping drivers, and build a plan that may include precise diagnosis, minimally invasive excision when appropriate, and coordinated integrative support so your recovery and long-term symptom control are set up for success.

Read full answer

Reach Out

Have a question?

Dr. Steven Vasilev delivers best-in-class endometriosis guidance and a personalized treatment plan—built on evidence and your unique biology.


Led by Steven Vasilev, MD—an internationally recognized endometriosis specialist & MIGS surgeon—Lotus Endometriosis Institute is virtual-forward, with many patients traveling nationally for care. Clinical evaluation and surgical treatment are provided in California.

Santa Monica, CA

2121 Santa Monica Blvd, Santa Monica, CA 90404

Operating Hours

8:00 am - 5:00 pm
Monday - Friday

Arroyo Grande, CA

154 Traffic Way, Arroyo Grande, CA 93420